PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G122900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 480aa    MW: 53964.1 Da    PI: 6.635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G122900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.6e-07281323855
                        HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+++++++ +Lr+l+P       ++++  ++L  A  YI +Lq
  Aqcoe3G122900.1.p 281 TERNRRKKLKTKILTLRSLVPDI-----TRMDIQATLGDAKSYIEKLQ 323
                        6*********************7.....69***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-109141IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.74E-8272327No hitNo description
SuperFamilySSF474591.03E-12272337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.957273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-11275342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-4281323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MGALERVLEK LRPLVRKNGW DYCVIWKLGD YSIRFIEMVG CCCGGAKETQ VRLEGKLVQL  60
CKDMVLPHSK TTKACDALAE LPTSIPISSG IHVEALISGR PRWINSDEIA GTRLLIPFIG  120
GLIEFFAAKQ VPKDQNMIKL IMVECNISLE KEGIIAFMGD NLKEQKLEGS IYNARLTEEG  180
NQFFQSTMSD HSWLEGSSTS SVCLVEPLPV DSSPGFRREQ VAGLDRSPGL AHPELLVESL  240
IPTQPEYNHK IRPKKNIVKE KDLNDLRRRE GESRKSRNLF TERNRRKKLK TKILTLRSLV  300
PDITRMDIQA TLGDAKSYIE KLQTEVKALQ DELKDLEDEA NKNAELKDQT VADKGKTEDY  360
VTSHFSASDI STDQSKYNQD SLPAYDLAQQ MEEKVEVSEC GENTFALKLI FERRRGWFLM  420
LMEAMQALGL NITEANAISV KGRVMNIFKA EAKSDGVQTE QLKDSLLKLL HNGLLMDKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266287RRREGESRKSRNLFTERNRRKK
2266289RRREGESRKSRNLFTERNRRKKLK
3276285RNLFTERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.19e-59bHLH family protein